ARCHIVED: Packages included in the basic XCBC and XNIT software suites

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Following is a list of packages available via either XNIT or one of the versions of XCBC.

Category	Package name	XNIT^*	Old XCBC^**	New XCBC^**
XNIT compatibility		✔Yes		✔Yes
Scientific
	autodocksuite	✔Yes		✔Yes
	hmmer	✔Yes		✔Yes
	gromacs	✔Yes	✔Yes	✔Yes
	gromacs-common	✔Yes	✔Yes	✔Yes
	gromacs-libs	✔Yes	✔Yes	✔Yes
	gromacs-openmpi	✔Yes		✔Yes
	gromacs-tutor	✔Yes		✔Yes
	gromacs-devel	✔Yes		✔Yes
	mrbayes	✔Yes		✔Yes
	ncbi-blast	✔Yes	✔Yes	✔Yes
	BEDTools	✔Yes		✔Yes
	SHRiMP	✔Yes	✔Yes	✔Yes
	bowtie	✔Yes	✔Yes	✔Yes
	bwa	✔Yes	✔Yes	✔Yes
	espresso-ab	✔Yes	✔Yes	✔Yes
	geos		✔Yes
	lammps	✔Yes	✔Yes	✔Yes
	lammps-common	✔Yes	✔Yes	✔Yes
	lammps-mpich	✔Yes		✔Yes
	lammps-openmpi	✔Yes		✔Yes
	meep	✔Yes	✔Yes	✔Yes
	nwchem	✔Yes	✔Yes	✔Yes
	nwchem-common	✔Yes	✔Yes	✔Yes
	nwchem-mpich	✔Yes		✔Yes
	nwchem-openmpi	✔Yes		✔Yes
	Rocks Bio Roll		✔Yes
Compilers/languages/interpreters
	R		✔Yes
	R-core		✔Yes
	ncl	✔Yes	✔Yes	✔Yes
	ncl-common	✔Yes	✔Yes	✔Yes
	ncl-debuginfo	✔Yes	✔Yes	✔Yes
	ncl-devel	✔Yes	✔Yes	✔Yes
	ncl-examples	✔Yes	✔Yes	✔Yes
	octave		✔Yes
	rhino		✔Yes
Lin. algebra/libraries/MPI implementations
	openmpi		✔Yes	✔Yes
	mpich		✔Yes	✔Yes
	slepc		✔Yes
	scalapack	✔Yes		✔Yes
	scalapack-common	✔Yes	✔Yes	✔Yes
	scalapack-mpich	✔Yes		✔Yes
	scalapack-openmpi	✔Yes		✔Yes
	saga	✔Yes	✔Yes	✔Yes
	samtools	✔Yes	✔Yes	✔Yes
	netcdf	✔Yes	✔Yes	✔Yes
	mpich2		✔Yes
	mpi4py-common		✔Yes
	mpi4py-mpich2		✔Yes
	mpi4py-openmpi		✔Yes
	libgtextutils	✔Yes	✔Yes	✔Yes
	lasi		✔Yes
	glpk	✔Yes	✔Yes	✔Yes
	fftw		✔Yes
	fftw2		✔Yes
	PLAPACK		✔Yes
	PnetCDF		✔Yes
	arpack	✔Yes		✔Yes
	atlas		✔Yes
	atlas-devel		✔Yes
	atlas-sse3		✔Yes
	atlas-sse3-devel		✔Yes
	blacs	✔Yes		✔Yes
	blas		✔Yes
	boost		✔Yes
	boost-date-time		✔Yes
	boost-filesystem		✔Yes
	boost-graph		✔Yes
	boost-iostreams		✔Yes
	boost-program-options		✔Yes
	boost-python		✔Yes
	boost-regex		✔Yes
	boost-serialization		✔Yes
	boost-signals		✔Yes
	boost-system		✔Yes
	boost-test		✔Yes
	boost-thread		✔Yes
	boost-wave		✔Yes
	charm++	✔Yes	✔Yes	✔Yes
	elemental	✔Yes	✔Yes	✔Yes
	gsl		✔Yes
	petsc	✔Yes	✔Yes	✔Yes
	picard-tools		✔Yes
	qrupdate		✔Yes
	sparsehash-devel	✔Yes	✔Yes	✔Yes
	sprng	✔Yes	✔Yes	✔Yes
	sratoolkit	✔Yes	✔Yes	✔Yes
	sundials		✔Yes
	wxBase		✔Yes
	wxGTK		✔Yes
	wxGTK3		✔Yes
	plplot	✔Yes	✔Yes	✔Yes
	plplot-libs	✔Yes	✔Yes	✔Yes
	plplot-devel	✔Yes		✔Yes
	gdal		✔Yes
	gdal-devel		✔Yes
	gdal-java		✔Yes
	GotoBLAS2		✔Yes
	hdf5		✔Yes
	java-openjdk		✔Yes
	java-openjdk-devel		✔Yes
	libRmath		✔Yes
	libRmath-devel		✔Yes
	numpy		✔Yes
	ogdi		✔Yes
	suitesparse		✔Yes
	udunits2		✔Yes
Visualization
	gnuplot		✔Yes
	gnuplot-common		✔Yes
	GraphicsMagick		✔Yes
	GraphicsMagick-c++		✔Yes
Utilities
	abyss	✔Yes	✔Yes	✔Yes
	ant		✔Yes
	darshan	✔Yes		✔Yes
	darshan-runtime-mpich		✔Yes
	darshan-runtime-openmpi		✔Yes
	darshan-util	✔Yes	✔Yes	✔Yes
	ghull		✔Yes
	valgrind		✔Yes
	nco		✔Yes
Cluster management tools
	Rocks cluster management software		✔Yes
	Torque resource manager		✔Yes
	Maui scheduler		✔Yes
	Warewulf cluster management software			✔Yes
	SLURM scheduler			✔Yes
	Ansible for cluster configuration management			✔Yes
	lmod			✔Yes
	linux modules		✔Yes

* The list of packages marked as available in XNIT reflects the current set of packages available for CentOS 7. There are many packages in the repository for CentOS 6; however, due to end of life concerns, they may not be actively updated.

** The packages for the old XCBC (Rocks-based version) are presented as a basis for comparison between it and the new XCBC (OpenHPC-based version).